Mead, D. & Schoenfeld T. (2011). "Assembly of Viral Metagenomes from Yellowstone Hot Springs Reveals Phylogenetic Relationships and Host Co-Evolution." In de Bruijn, Frans J. Editor, Handbook of Molecular Microbial Ecology II: Metagenomics in different habitats (pp. 45-63). Hoboken, NJ: Wiley-Blackwell.
Mead, D. & Schoenfeld T. (2011). "Functional Viral Metagenomics and the Development of New Enzymes for DNA and RNA Amplification and Sequencing." In de Bruijn, Frans J. Editor, Handbook of Molecular Microbial Ecology II: Metagenomics in different habitats (pp. 563-577). Hoboken, NJ: Wiley-Blackwell.
Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, Drinkwater C, Ivanova NN, Mikhailova N, Chertkov O, Goodwin LA, Currie CR, Mead D, and Brumm PJ. 2011. The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist. PLoS ONE, In press.Carrias A, Welch TJ, Waldbieser GC, Mead DA, Terhune JS, and Liles MR (2011) Comparative Genomic Analysis of Bacteriophages specific to the Channel Catfish Pathogen Edwardsiella ictaluri. Virology J. In Press.
Kakirde KS, Wild J, Godiska R, Mead DA, Wiggins AG, Goodman RM, Szybalski W, and Liles MR (2010) Gram negative shuttle BAC vector for heterologous expression of metagenomic libraries. Gene. 2010 Nov 25. [Epub ahead of print] PubMed PMID:21112378.
Gao D, Uppugundla N, Chundawat SP, Yu X, Hermanson S, Gowda K, Brumm P, Mead D, Balan V, Dale BE. (2011) Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnol Biofuels. 4:5.
Brumm P, Hermanson S, Hochstein B, Boyum J, Hermersmann N, Gowda K, Mead D. (2011) Mining Dictyoglomus turgidum for enzymatically active carbohydrases. Appl Biochem Biotechnol. 163:205-214.
Brumm P, Mead D, Boyum J, Drinkwater C, Gowda K, Stevenson D, Weimer P. (2011) Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes. Appl Biochem Biotechnol. 163:649-57
Dhodda V, Godiska R, Vanwye JD, Mead D, Hochstein R, Sheets L, Zande SV, Niebauer C, Crawford DL, Oleksiak MF. (2010) ExCyto PCR Amplification. PLoS One 8;5(9).
Godiska R, Mead DA, Dhodda V, Hochstein R, Karsi A, Usdin K, Entezam A, Ravin N. (2010) Linear plasmid for cloning large or repetitive sequences in E. coli. Nuc. Acids Res. 38:e88.
Schoenfeld T, Liles M, Wommack EK, Polson SW, Godiska R, and Mead D. (2010) Functional viral metagenomics and the next generation of molecular tools. Trends in Microbiology. 18:20-29.
Chang Y, Mead DA, Dhodda V, Brumm P, and Fox BG. (2009) One-plasmid tunable co-expression for mycobacterial protein-protein interaction studies. Protein Sci. 18:2316-2325.
Reysenbach AL, Hamamura N, Podar M, Griffiths E, Ferreira S, Hochstein R, Heidelberg J, Johnson J, Mead D, Pohorille A, Sarmiento M, Schweighofer K, Seshadri R, Voytek MA. (2009) Complete and draft genome sequences of six members of the Aquificales. J Bact. 191:1992-1993.
Heidelberg, J.F., Nelson, W.C., Schoenfeld, T., Bhaya, D., (2009). Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes. PLoS ONE. 4(1):e4169.
Samuels, M., Leamon, J., Rothberg, J., Godiska, G., Schoenfeld, T., Mead, D. (2009). "New Paradigms in Droplet Based Microfluidics and DNA Amplification." In Automation in Genomics and Proteomics: An Engineering CaseBased Approach (G Alterovitz, M Ramoni, R Beson ed.) Wiley.
Schoenfeld, Thomas, Liles, Mark, Wommack, K. Eric, Polson, Shawn W., Godiska, Ronald and Mead, David (2009). "Functional viral metagenomics and the next generation of molecular tools." Trends in Microbiology. 18(1): 20-29.
Wommack, K.E., Bench, S.R., Bhavsar, J., Mead, D., Hanson, T. (2009). "Isolation independent methods of characterizing phage communities: Characterizing a metagenome." In Bacteriophages: Methods and Protocols (A. Kropinski, M. Cloike eds.) Humana Press.
Pride, DT., Schoenfeld, T. (2008). Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. BMC Genomics. 9:420.
Schoenfeld, T., Patterson, M., Richardson, P.M., Wommack, K.E., Young, M., Mead, D. (2008). Assembly of viral metagenomes from yellowstone hot springs. Appl Environ Microbiol. 74:4164.
Srinivasiah, S., Bhavsar, J., Thapar, K., Liles, M., Schoenfeld, T., Wommack, K.E. (2008). Phages across the biosphere: contrasts of viruses in soil and aquatic environments. Res Microbiol. 159:349.
Godiska, R., Patterson, M., Schoenfeld, T., Mead, D.A. (2005). “Beyond pUC: Vectors for Cloning Unstable DNA.” In DNA Sequencing: Optimizing the Process and Analysis. (J. Kieleczawa, ed.), Jones and Bartlett Publishers, Sudbury, MA.
Breitbart, M., Wegley, L., Leeds, S., Schoenfeld, T., Rohwer, F. (2004). Phage community dynamics in hot springs. Appl Environ Microbiol. 70:1633.
Breitbart, M., Salamon, P., Andresen, B., Mahaffy, J.M., Segall, A.M., Mead, D., Azam, F., and Rohwer, F. (2002). Genomic analysis of uncultured marine viral communities. Proc. Nat. Acad. Sci. 99: 14250-14255.
