GC Cloning (patents pending) is the first major advance in PCR cloning since the first description of TA-cloning (Mead, D., et. al. (1991) Biotechnology 9, 657.) TA-cloning takes advantage of the well-known property of non-proofreading DNA polymerases (e.g., Taq, Tfl, Tth) to add a single 3´-A to PCR products.
The GC Cloning technology is based on the discovery that these same enzymes add a single 3´-G to DNA molecules, either during PCR or as a separate G-tailing reaction to any blunt DNA (Figure 1). The BigEasy Long PCR Cloning Kits contain everything needed to efficiently clone blunt or G-tailed PCR products up to 30 kb into the unbiased, high-fidelity pJAZZ linear cloning vector. There are two different versions of the vector (Figure 2) that are compatible with either proofreading (pJAZZ-OK Blunt Vector) or non-proofreading (pJAZZ-OK GC Vector) PCR polymerases.
The pJAZZ vector is ideal for cloning difficult PCR products of any size up to 30 kb (Figure 3). Because the novel pJAZZ vector is linear, the ends of the vector can rotate freely. As a result, the vector does not supercoil. Without the torsional stress induced by supercoiling, otherwise unclonable sequences (e.g., repetitive, or A/T- or G/C-rich sequences) are stabilized. The pJAZZ linear cloning vector is maintained at low copy number (5-10/cell) in BigEasy-TSA™ Electrocompetent Cells (>4 x 1010 cfu/µg), which are required for transformation and propagation. The copy number can be induced 5-10X in this strain. In addition, the pJAZZ vector incorporates Lucigen’s CloneSmart® technology for transcription-free cloning, which further increases insert stability. pJAZZ clones can be isolated using conventional plasmid prep methods and sequenced using standard techniques. See protocol for high-throughput Sanger sequencing of pJAZZ clones.
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Figure 1. GC Cloning. PCR performed using EconoTaq™ or other non-proofreading DNA polymerase adds a single G overhang to the PCR products. Alternately, incubation of blunt-ended DNA with EconoTaq DNA Polymerase adds the 3´-G overhang. Ligation to the complementary C-overhang pJAZZ-OK GC Vector is fast and highly efficient. |
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Figure 2. The pJAZZ-OK Blunt and GC vectors. The left arm is 10 kb and the right arm is 2.2 kb. Top Panel – After processing, the vector has blunt dephosphorylated ends; blunt insert DNA is ligated to vector arms. Bottom panel – After processing, the GC vector has C-tailed, dephosphorylated ends; G-tailed insert DNA is ligated to vector arms. telN - protelomerase gene; repA - replication factor and origin of replication; cB - regulator of copy number; Kanr - kanamycin resistance gene. Approximate position of transcription terminators (T) are indicated. |
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Figure 3. Large PCR products cloned into BigEasy Long PCR Cloning Kit. The Left Arm (10 kb) is indicated; the Right arm was run off the gel. |
Convenient Success
Efficiently clone your PCR product regardless of its size, base composition, or enzyme used to generate it. Kits include ligation-ready vector (no post-ligation cleanup step required), and highly efficient TSA electrocompetent cells (up to >4 X 1010 cfu/µg), detailed instructions, and trouble-shooting guides to simplify PCR cloning.
| Document | File Name | Type |
| Manual | MA048-BigEasy-Long-PCR-Cloning-Kit | |
| Poster | pJAZZ-lowres | |
| eLucidations | BigEasy-Long-PCR_v8 | |
| Citations | BigEasy® Long PCR Cloning Kit (pJAZZ® Vectors) - Citations | LINK |
| Vector Sequence | Sequence(s) | Link |
| MSDS |